Transcript: Mouse XM_006502619.3

PREDICTED: Mus musculus oxysterol binding protein-like 9 (Osbpl9), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Osbpl9 (100273)
Length:
2871
CDS:
53..2263

Additional Resources:

NCBI RefSeq record:
XM_006502619.3
NBCI Gene record:
Osbpl9 (100273)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006502619.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162447 CGAATGGTTCAGGTTGTGAAA pLKO.1 1337 CDS 100% 4.950 6.930 N OSBPL9 n/a
2 TRCN0000352912 CGAATGGTTCAGGTTGTGAAA pLKO_005 1337 CDS 100% 4.950 6.930 N OSBPL9 n/a
3 TRCN0000105014 GCTTAATAGATTCTTCTGGAT pLKO.1 981 CDS 100% 2.640 2.112 N Osbpl9 n/a
4 TRCN0000325932 GCTTAATAGATTCTTCTGGAT pLKO_005 981 CDS 100% 2.640 2.112 N Osbpl9 n/a
5 TRCN0000306134 CACCAAGAAATTGCCTATAAT pLKO_005 1981 CDS 100% 15.000 10.500 N Osbpl9 n/a
6 TRCN0000105010 CGACACAGATGAACAATTAAA pLKO.1 2394 3UTR 100% 15.000 10.500 N Osbpl9 n/a
7 TRCN0000325929 CGACACAGATGAACAATTAAA pLKO_005 2394 3UTR 100% 15.000 10.500 N Osbpl9 n/a
8 TRCN0000306135 TAATCCTGTAGATGCAATATA pLKO_005 643 CDS 100% 15.000 10.500 N Osbpl9 n/a
9 TRCN0000105013 CTTCCACACTAAGCCTTTCTA pLKO.1 1825 CDS 100% 5.625 3.938 N Osbpl9 n/a
10 TRCN0000325863 CTTCCACACTAAGCCTTTCTA pLKO_005 1825 CDS 100% 5.625 3.938 N Osbpl9 n/a
11 TRCN0000105012 CAATGCTCATATCTGGACTAA pLKO.1 1609 CDS 100% 4.950 3.465 N Osbpl9 n/a
12 TRCN0000162710 CCTTTGGAAGGATGTCACTTT pLKO.1 2053 CDS 100% 4.950 3.465 N OSBPL9 n/a
13 TRCN0000105011 GAATGGTATCATGTATGCAAA pLKO.1 1927 CDS 100% 4.950 3.465 N Osbpl9 n/a
14 TRCN0000165214 GCCTTTGGAAGGATGTCACTT pLKO.1 2052 CDS 100% 4.950 3.465 N OSBPL9 n/a
15 TRCN0000343431 GCCTTTGGAAGGATGTCACTT pLKO_005 2052 CDS 100% 4.950 3.465 N OSBPL9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006502619.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.