Transcript: Mouse XM_006503786.1

PREDICTED: Mus musculus prominin 1 (Prom1), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Prom1 (19126)
Length:
3936
CDS:
457..3036

Additional Resources:

NCBI RefSeq record:
XM_006503786.1
NBCI Gene record:
Prom1 (19126)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006503786.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000115316 CCTGCGGTTTAGAAATAGAAT pLKO.1 3667 3UTR 100% 5.625 7.875 N Prom1 n/a
2 TRCN0000115319 GCTGGAAGAATATGACTCGTA pLKO.1 1737 CDS 100% 2.640 2.112 N Prom1 n/a
3 TRCN0000115317 GCAGAATAAAGGACCAACTAA pLKO.1 1175 CDS 100% 5.625 3.938 N Prom1 n/a
4 TRCN0000115320 CTATTCAATAACCCAGACATT pLKO.1 2095 CDS 100% 4.950 3.465 N Prom1 n/a
5 TRCN0000115318 CCCTCTGAATTTGTTCTGGTT pLKO.1 2829 CDS 100% 2.640 1.848 N Prom1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006503786.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.