Transcript: Mouse XM_006504713.2

PREDICTED: Mus musculus speedy/RINGO cell cycle regulator family, member E4B (Spdye4b), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Spdye4b (330228)
Length:
2341
CDS:
698..1438

Additional Resources:

NCBI RefSeq record:
XM_006504713.2
NBCI Gene record:
Spdye4b (330228)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006504713.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000181696 CATGCCGTCTAAATCTGCTTT pLKO.1 760 CDS 100% 4.950 6.930 N Spdye4b n/a
2 TRCN0000200031 CCTAGAAGAACCCAGACTCTT pLKO.1 1510 3UTR 100% 4.950 2.475 Y Spdye4b n/a
3 TRCN0000198595 CCTGTCTATGGTCATAGCTTA pLKO.1 1072 CDS 100% 4.950 2.475 Y Spdye4b n/a
4 TRCN0000177615 CATCTAAATGTTATCCCGAAT pLKO.1 1651 3UTR 100% 4.050 2.025 Y Spdye4b n/a
5 TRCN0000198579 GCAGAGCTATTTGAACCTGAT pLKO.1 875 CDS 100% 4.050 2.025 Y Spdye4b n/a
6 TRCN0000182645 GTGTGAAGAGATCCAGGCTTA pLKO.1 1312 CDS 100% 4.050 2.025 Y Spdye4b n/a
7 TRCN0000182838 CATGTTCCACAAACTGCGCTT pLKO.1 1243 CDS 100% 2.160 1.080 Y Spdye4b n/a
8 TRCN0000178718 CCATCTAAATGTTATCCCGAA pLKO.1 1650 3UTR 100% 2.160 1.080 Y Spdye4b n/a
9 TRCN0000189447 CAGACAAGTACCTCCTGTCTA pLKO.1 1059 CDS 100% 0.495 0.248 Y Spdye4a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006504713.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.