Transcript: Mouse XM_006504775.3

PREDICTED: Mus musculus family with sequence similarity 20, member C (Fam20c), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam20c (80752)
Length:
3860
CDS:
2177..3145

Additional Resources:

NCBI RefSeq record:
XM_006504775.3
NBCI Gene record:
Fam20c (80752)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006504775.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328781 CCCATAGGGAGGGACCTTTAA pLKO_005 3361 3UTR 100% 13.200 18.480 N Fam20c n/a
2 TRCN0000328835 GAATTACGGGCAGGCGCTATT pLKO_005 2221 CDS 100% 10.800 15.120 N Fam20c n/a
3 TRCN0000121464 CATCATGGATATGACCGTCTT pLKO.1 2719 CDS 100% 4.050 5.670 N Fam20c n/a
4 TRCN0000328779 CATCATGGATATGACCGTCTT pLKO_005 2719 CDS 100% 4.050 5.670 N Fam20c n/a
5 TRCN0000328836 CTATCCCAACTGGCTCAAATT pLKO_005 2056 5UTR 100% 13.200 9.240 N Fam20c n/a
6 TRCN0000121462 GCCACTTCAAGGACCTTCTAT pLKO.1 3460 3UTR 100% 5.625 3.938 N Fam20c n/a
7 TRCN0000121465 TCACACGATGAGCTTTCCATT pLKO.1 2849 CDS 100% 4.950 3.465 N Fam20c n/a
8 TRCN0000121466 ACCTTTGAGAAGTTCGGGAAT pLKO.1 2780 CDS 100% 4.050 2.835 N Fam20c n/a
9 TRCN0000328780 ACCTTTGAGAAGTTCGGGAAT pLKO_005 2780 CDS 100% 4.050 2.835 N Fam20c n/a
10 TRCN0000121463 CGGGATAAGAAGCTATGGAGA pLKO.1 2423 CDS 100% 2.640 1.584 N Fam20c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006504775.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.