Transcript: Mouse XM_006504926.1

PREDICTED: Mus musculus FRY microtubule binding protein (Fry), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fry (320365)
Length:
10659
CDS:
107..9331

Additional Resources:

NCBI RefSeq record:
XM_006504926.1
NBCI Gene record:
Fry (320365)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006504926.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000374987 GTATAAGTGGCTCGACAATAT pLKO_005 3790 CDS 100% 13.200 18.480 N Fry n/a
2 TRCN0000374927 GGCTTCTTTGCCTGATATAAA pLKO_005 8002 CDS 100% 15.000 10.500 N Fry n/a
3 TRCN0000345485 ATGAACAGCAGCGAGACTATT pLKO_005 708 CDS 100% 13.200 9.240 N Fry n/a
4 TRCN0000345484 CTTCAGCTGCTTCGGATATTC pLKO_005 3332 CDS 100% 13.200 9.240 N Fry n/a
5 TRCN0000345414 GACATGACTTCCGTTGCATTA pLKO_005 9605 3UTR 100% 10.800 7.560 N Fry n/a
6 TRCN0000374926 GCTACCCTTCACCAAGCAAAT pLKO_005 9564 3UTR 100% 10.800 7.560 N Fry n/a
7 TRCN0000142765 CCCAATCAGTTCTGTAAGGAT pLKO.1 6740 CDS 100% 3.000 2.100 N FRY n/a
8 TRCN0000345412 ACCATCCTCCTGCCCTATATT pLKO_005 4646 CDS 100% 15.000 9.000 N Fry n/a
9 TRCN0000122800 GCGGAGACAACTATGTTACTT pLKO.1 2961 CDS 100% 5.625 7.875 N FRY n/a
10 TRCN0000362726 GGATGACACCAACAGCGAATA pLKO_005 7603 CDS 100% 10.800 5.400 Y Mapk8ip2 n/a
11 TRCN0000142067 GTTGCGGAACAAAGACCTGAT pLKO.1 4124 CDS 100% 4.050 2.835 N DIP2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006504926.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.