Transcript: Mouse XM_006505530.3

PREDICTED: Mus musculus fibulin 2 (Fbln2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fbln2 (14115)
Length:
4289
CDS:
305..3970

Additional Resources:

NCBI RefSeq record:
XM_006505530.3
NBCI Gene record:
Fbln2 (14115)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505530.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000363969 ACGCACTACCAGCTCAATTTC pLKO_005 3674 CDS 100% 13.200 18.480 N Fbln2 n/a
2 TRCN0000364013 TTGATTGTCCACCCAACTATG pLKO_005 3576 CDS 100% 10.800 15.120 N Fbln2 n/a
3 TRCN0000109478 CGATTGTAGCTGGAAACAGTT pLKO.1 2458 CDS 100% 4.950 6.930 N Fbln2 n/a
4 TRCN0000348134 ACGCTGGTGGTGAGCTCATTT pLKO_005 792 CDS 100% 13.200 9.240 N Fbln2 n/a
5 TRCN0000379094 GCTGTGTGCAGAGGGCTATAT pLKO_005 2524 CDS 100% 13.200 9.240 N Fbln2 n/a
6 TRCN0000348133 ATGCCCAGAGCAAGGGTATAC pLKO_005 3439 CDS 100% 10.800 7.560 N Fbln2 n/a
7 TRCN0000374572 TCCACAGTGGCCGTAAGTATG pLKO_005 720 CDS 100% 10.800 7.560 N Fbln2 n/a
8 TRCN0000109476 GCCAACATCTATGGCTCCTAT pLKO.1 3284 CDS 100% 4.950 3.465 N Fbln2 n/a
9 TRCN0000109479 CCCAACTGCATTGAAGCTGTA pLKO.1 656 CDS 100% 4.050 2.835 N Fbln2 n/a
10 TRCN0000109477 CCAGAGTGACATCTGTAGGAT pLKO.1 1675 CDS 100% 3.000 2.100 N Fbln2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505530.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.