Transcript: Mouse XM_006505813.3

PREDICTED: Mus musculus rhotekin (Rtkn), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rtkn (20166)
Length:
2701
CDS:
330..1934

Additional Resources:

NCBI RefSeq record:
XM_006505813.3
NBCI Gene record:
Rtkn (20166)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505813.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000322093 TGGTGTGCAACAGCCGTATTC pLKO_005 688 CDS 100% 10.800 15.120 N Rtkn n/a
2 TRCN0000322094 CTCTTAAGTTGTGGCTATCAT pLKO_005 2495 3UTR 100% 5.625 4.500 N Rtkn n/a
3 TRCN0000180783 GCACTGTTGTGATGAAGTCAT pLKO.1 1727 CDS 100% 4.950 3.960 N Rtkn n/a
4 TRCN0000322030 GTGGAAGGATACAGAGTATTT pLKO_005 854 CDS 100% 13.200 9.240 N Rtkn n/a
5 TRCN0000322028 CAAGAACCACTGTTCACTATC pLKO_005 1515 CDS 100% 10.800 7.560 N Rtkn n/a
6 TRCN0000180190 CTCAGCATCAGCAACAAGTAT pLKO.1 1602 CDS 100% 5.625 3.938 N Rtkn n/a
7 TRCN0000181058 CAAGATGGATTCCGTACACAT pLKO.1 1269 CDS 100% 4.950 3.465 N Rtkn n/a
8 TRCN0000184056 CAGCCGTATTCTCAGCTACAT pLKO.1 698 CDS 100% 4.950 3.465 N Rtkn n/a
9 TRCN0000219580 CACCCTGGCTAGCAATGTTTA pLKO.1 2086 3UTR 100% 13.200 7.920 N Rtkn n/a
10 TRCN0000322092 CACCCTGGCTAGCAATGTTTA pLKO_005 2086 3UTR 100% 13.200 7.920 N Rtkn n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505813.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.