Transcript: Mouse XM_006507591.2

PREDICTED: Mus musculus transmembrane channel-like gene family 3 (Tmc3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tmc3 (233424)
Length:
8002
CDS:
792..4097

Additional Resources:

NCBI RefSeq record:
XM_006507591.2
NBCI Gene record:
Tmc3 (233424)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006507591.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000069055 CCTTCAATACTCCGTCCTGTT pLKO.1 1397 CDS 100% 4.050 5.670 N Tmc3 n/a
2 TRCN0000069511 CAGCTTCATCGTTCTCTTAAA pLKO.1 1511 CDS 100% 13.200 9.240 N LOC381971 n/a
3 TRCN0000069053 CCCAGGTACTATGTGGTTAAT pLKO.1 3447 CDS 100% 13.200 9.240 N Tmc3 n/a
4 TRCN0000069057 CCAGAATATACAGTTTCAGAA pLKO.1 944 CDS 100% 4.950 3.465 N Tmc3 n/a
5 TRCN0000069510 CGTCCTGTTCTACGGGTACTA pLKO.1 1409 CDS 100% 4.950 3.465 N LOC381971 n/a
6 TRCN0000069054 GCCACATACAAAGGCCAACAA pLKO.1 2234 CDS 100% 4.950 3.465 N Tmc3 n/a
7 TRCN0000069512 CAGATCACATCTGCACAGGAT pLKO.1 1347 CDS 100% 2.640 1.848 N LOC381971 n/a
8 TRCN0000069508 CTTTGGAAGTACAGCCAGCAA pLKO.1 1310 CDS 100% 2.640 1.848 N LOC381971 n/a
9 TRCN0000069509 AGTGTTTGCTTACAGCTTCAT pLKO.1 1499 CDS 100% 4.950 2.970 N LOC381971 n/a
10 TRCN0000069056 CCTCAGTGTATATGGCAACAT pLKO.1 3067 CDS 100% 4.950 2.970 N Tmc3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006507591.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.