Transcript: Mouse XM_006508152.2

PREDICTED: Mus musculus cytochrome c oxidase assembly factor 4 (Coa4), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Coa4 (68185)
Length:
1387
CDS:
97..360

Additional Resources:

NCBI RefSeq record:
XM_006508152.2
NBCI Gene record:
Coa4 (68185)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006508152.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182564 GCCTTCAGGGATTGTATGAGT pLKO.1 274 CDS 100% 3.000 4.200 N Coa4 n/a
2 TRCN0000215939 CATTCTTGTTCTACCAATATT pLKO.1 556 3UTR 100% 15.000 10.500 N Coa4 n/a
3 TRCN0000217931 GACTGTGTGCCAAGTACTTTA pLKO.1 616 3UTR 100% 13.200 9.240 N Coa4 n/a
4 TRCN0000216048 CATATCCTCCACATTCTTGTT pLKO.1 545 3UTR 100% 4.950 3.465 N Coa4 n/a
5 TRCN0000198657 CCCAGACTGATCTTAGACTTA pLKO.1 928 3UTR 100% 4.950 3.465 N Coa4 n/a
6 TRCN0000200074 CCCTCACCAAACCAACACAAA pLKO.1 1064 3UTR 100% 4.950 3.465 N Coa4 n/a
7 TRCN0000182769 CCGGTGAAGAAGGATGATGAT pLKO.1 136 CDS 100% 4.950 3.465 N Coa4 n/a
8 TRCN0000181762 GAAGGATGATGATGAGGAAGA pLKO.1 144 CDS 100% 4.050 2.835 N Coa4 n/a
9 TRCN0000182565 GCAGTGACATAAGTGCCTCTA pLKO.1 821 3UTR 100% 4.050 2.835 N Coa4 n/a
10 TRCN0000182770 CCTGGGAAGAAGAAACCCTAA pLKO.1 413 3UTR 100% 4.050 2.430 N Coa4 n/a
11 TRCN0000181523 GAAGAAGGATGATGATGAGGA pLKO.1 141 CDS 100% 2.640 1.584 N Coa4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006508152.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.