Transcript: Mouse XM_006509942.3

PREDICTED: Mus musculus glutamate receptor, ionotropic, kainate 4 (Grik4), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Grik4 (110637)
Length:
4052
CDS:
904..3672

Additional Resources:

NCBI RefSeq record:
XM_006509942.3
NBCI Gene record:
Grik4 (110637)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006509942.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415866 ACGTGAGAAAGTGATCGATTT pLKO_005 2319 CDS 100% 10.800 15.120 N Grik4 n/a
2 TRCN0000100297 GCCATTGAGTATGGCACGATT pLKO.1 2791 CDS 100% 0.495 0.693 N Grik4 n/a
3 TRCN0000425845 GGGATGGTGTCAGCCTATTAC pLKO_005 1504 CDS 100% 13.200 10.560 N Grik4 n/a
4 TRCN0000100296 CGCTGGGAATTAGTATTCTTT pLKO.1 2357 CDS 100% 5.625 4.500 N Grik4 n/a
5 TRCN0000422204 GAATCTTTGTGGTTCTTATTT pLKO_005 3221 CDS 100% 15.000 10.500 N Grik4 n/a
6 TRCN0000422658 AGGTCGAAGTGGACATCTTTG pLKO_005 989 CDS 100% 10.800 7.560 N GRIK4 n/a
7 TRCN0000422383 ATGATAGAGTCAACATCTTAG pLKO_005 1580 CDS 100% 10.800 7.560 N Grik4 n/a
8 TRCN0000427559 GGTAGAATTGGAAGGTCTTAC pLKO_005 1860 CDS 100% 10.800 7.560 N GRIK4 n/a
9 TRCN0000434522 GTGTCAGCCTATTACACATAC pLKO_005 1510 CDS 100% 10.800 7.560 N GRIK4 n/a
10 TRCN0000100298 CCTACGGTTCAACTACAAGAT pLKO.1 2175 CDS 100% 4.950 3.465 N Grik4 n/a
11 TRCN0000100299 CTGCTGTTTGACGCTGTCTAT pLKO.1 1720 CDS 100% 4.950 3.465 N Grik4 n/a
12 TRCN0000100295 CCTTTCCCTCACACTCAAATA pLKO.1 3909 3UTR 100% 13.200 7.920 N Grik4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006509942.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.