Transcript: Mouse XM_006509948.1

PREDICTED: Mus musculus Down syndrome cell adhesion molecule like 1 (Dscaml1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dscaml1 (114873)
Length:
5742
CDS:
563..5194

Additional Resources:

NCBI RefSeq record:
XM_006509948.1
NBCI Gene record:
Dscaml1 (114873)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006509948.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251168 TGAATATCAGGCGCGAATAAA pLKO_005 521 5UTR 100% 15.000 21.000 N Dscaml1 n/a
2 TRCN0000251166 GGTGTAGGATGGCCGACAAAT pLKO_005 5188 CDS 100% 13.200 18.480 N Dscaml1 n/a
3 TRCN0000222571 GCTGAATATCAGGCGCGAATA pLKO.1 519 5UTR 100% 10.800 15.120 N DSCAML1 n/a
4 TRCN0000251165 ACACGCGTGGAGAGATATATA pLKO_005 5436 3UTR 100% 15.000 12.000 N Dscaml1 n/a
5 TRCN0000251167 TGAAGACTCCGGCTATTATAC pLKO_005 3097 CDS 100% 13.200 9.240 N Dscaml1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006509948.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.