Transcript: Mouse XM_006510022.1

PREDICTED: Mus musculus ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C) (Elavl3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Elavl3 (15571)
Length:
5003
CDS:
423..1505

Additional Resources:

NCBI RefSeq record:
XM_006510022.1
NBCI Gene record:
Elavl3 (15571)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006510022.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000112048 GCCGAATCATCACTTCCAGAA pLKO.1 868 CDS 100% 4.050 5.670 N Elavl3 n/a
2 TRCN0000112046 CCGAGATTTCACCACCAACAA pLKO.1 1349 CDS 100% 4.950 3.465 N Elavl3 n/a
3 TRCN0000112045 CCTGGCCTATACTGAGAGAAA pLKO.1 1921 3UTR 100% 4.950 3.465 N Elavl3 n/a
4 TRCN0000112047 CGGCTGGACAATTTGCTCAAT pLKO.1 1134 CDS 100% 4.950 3.465 N Elavl3 n/a
5 TRCN0000112049 GCTGGACAATTTGCTCAATAT pLKO.1 1136 CDS 100% 13.200 7.920 N Elavl3 n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2330 3UTR 100% 4.950 2.475 Y KAAG1 n/a
7 TRCN0000112096 CCAACCTCATCGTCAACTATT pLKO.1 538 CDS 100% 13.200 6.600 Y Elavl4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006510022.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.