Transcript: Mouse XM_006511503.3

PREDICTED: Mus musculus nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nmnat3 (74080)
Length:
1991
CDS:
267..1004

Additional Resources:

NCBI RefSeq record:
XM_006511503.3
NBCI Gene record:
Nmnat3 (74080)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006511503.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000374769 AGTTTGACAGGGCGCTAATTA pLKO_005 1348 3UTR 100% 15.000 21.000 N Nmnat3 n/a
2 TRCN0000366158 ATATGCACCTGCGCTTGTTTG pLKO_005 325 CDS 100% 10.800 15.120 N Nmnat3 n/a
3 TRCN0000111520 CGGCTCAAACAATAATAGCAA pLKO.1 1396 3UTR 100% 3.000 4.200 N Nmnat3 n/a
4 TRCN0000111521 CGTCAATGACAGCTATGGGAA pLKO.1 410 CDS 100% 2.640 2.112 N Nmnat3 n/a
5 TRCN0000366159 TCGAGTATCAGAGCAACTTAA pLKO_005 1125 3UTR 100% 13.200 9.240 N Nmnat3 n/a
6 TRCN0000374768 CAGCACTGCCAGAGTTGAAAC pLKO_005 637 CDS 100% 10.800 7.560 N Nmnat3 n/a
7 TRCN0000366219 GCATCATCTCACCCGTCAATG pLKO_005 397 CDS 100% 10.800 7.560 N Nmnat3 n/a
8 TRCN0000111522 CAGCAGTTTCAGCACAACATT pLKO.1 810 CDS 100% 5.625 3.938 N Nmnat3 n/a
9 TRCN0000111523 AGTGCCACATACGTCAGGAAA pLKO.1 864 CDS 100% 4.950 3.465 N Nmnat3 n/a
10 TRCN0000374690 ATGACCCGGAAAGGTACATCT pLKO_005 772 CDS 100% 4.950 3.465 N Nmnat3 n/a
11 TRCN0000111524 CCTCTGGAAAGACACGCACAT pLKO.1 701 CDS 100% 4.050 2.835 N Nmnat3 n/a
12 TRCN0000374767 AGGCCGTCATCACCTACATCA pLKO_005 925 CDS 100% 4.950 2.970 N Nmnat3 n/a
13 TRCN0000035400 CAGGAAATAGTGGAGAAGTTT pLKO.1 723 CDS 100% 5.625 3.375 N NMNAT3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006511503.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.