Transcript: Mouse XM_006511732.3

PREDICTED: Mus musculus collagen, type VI, alpha 6 (Col6a6), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Col6a6 (245026)
Length:
5929
CDS:
381..5831

Additional Resources:

NCBI RefSeq record:
XM_006511732.3
NBCI Gene record:
Col6a6 (245026)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006511732.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000090251 GCATAACTTCGACGAGCTAAA pLKO.1 3851 CDS 100% 10.800 15.120 N Col6a6 n/a
2 TRCN0000091953 CGGCGATTAAAGCTCTTCCTT pLKO.1 5769 CDS 100% 3.000 4.200 N Gm1125 n/a
3 TRCN0000090250 GAGGACCTAGATCATCTTAAA pLKO.1 1104 CDS 100% 13.200 9.240 N Col6a6 n/a
4 TRCN0000090252 TGACTCACATTGGAGAAACAA pLKO.1 2452 CDS 100% 5.625 3.938 N Col6a6 n/a
5 TRCN0000090249 CCTAGATCATCTTAAAGCATT pLKO.1 1109 CDS 100% 4.950 3.465 N Col6a6 n/a
6 TRCN0000090248 GCCCACAGACTTCCATGAAAT pLKO.1 1721 CDS 100% 13.200 7.920 N Col6a6 n/a
7 TRCN0000091955 CCAGGAATGTCTTCAAGAGAA pLKO.1 5841 3UTR 100% 4.950 2.970 N Gm1125 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006511732.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.