Transcript: Mouse XM_006511955.2

PREDICTED: Mus musculus microtubule-associated protein 4 (Map4), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Map4 (17758)
Length:
5283
CDS:
472..3852

Additional Resources:

NCBI RefSeq record:
XM_006511955.2
NBCI Gene record:
Map4 (17758)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006511955.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306373 AGAGTGGACTATCCGGATTAT pLKO_005 790 CDS 100% 13.200 18.480 N Map4 n/a
2 TRCN0000089879 CCACGCTAACAATATCATATT pLKO.1 1401 CDS 100% 13.200 18.480 N Map4 n/a
3 TRCN0000089880 GCCCACGCTAACAATATCATA pLKO.1 1399 CDS 100% 5.625 7.875 N Map4 n/a
4 TRCN0000332301 GCCCACGCTAACAATATCATA pLKO_005 1399 CDS 100% 5.625 7.875 N Map4 n/a
5 TRCN0000306374 CCACGAACGCTTCTGCATTTA pLKO_005 947 CDS 100% 13.200 9.240 N Map4 n/a
6 TRCN0000311528 GCCAACTCCAACTTCACTATC pLKO_005 4216 3UTR 100% 10.800 7.560 N Map4 n/a
7 TRCN0000306432 GCCATCTACTGAATCGGATAT pLKO_005 1335 CDS 100% 10.800 7.560 N Map4 n/a
8 TRCN0000089881 GCAGAACAAATGTCTACCTTA pLKO.1 2284 CDS 100% 4.950 3.465 N Map4 n/a
9 TRCN0000089882 CCTCCAGAAATTGAGGGAGAA pLKO.1 511 CDS 100% 4.050 2.835 N Map4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006511955.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.