Transcript: Mouse XM_006512122.1

PREDICTED: Mus musculus zinc finger protein 445 (Zfp445), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp445 (235682)
Length:
6290
CDS:
303..3299

Additional Resources:

NCBI RefSeq record:
XM_006512122.1
NBCI Gene record:
Zfp445 (235682)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512122.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306599 TGTCAGGATGTAAGGTTAAAT pLKO_005 3009 CDS 100% 15.000 21.000 N Zfp445 n/a
2 TRCN0000095575 GCAATCTTTATCGGGATGTTA pLKO.1 1060 CDS 100% 5.625 7.875 N Zfp445 n/a
3 TRCN0000095576 CGCAATCTTTATCGGGATGTT pLKO.1 1059 CDS 100% 4.950 6.930 N Zfp445 n/a
4 TRCN0000332726 CGCAATCTTTATCGGGATGTT pLKO_005 1059 CDS 100% 4.950 6.930 N Zfp445 n/a
5 TRCN0000095574 CCTTAGATAATTCTTGCTGTT pLKO.1 3568 3UTR 100% 4.050 5.670 N Zfp445 n/a
6 TRCN0000306600 CTGTTGGGAAGGGCCCATTTA pLKO_005 3631 3UTR 100% 13.200 10.560 N Zfp445 n/a
7 TRCN0000306601 GCAACCACAGTGGCGTGATAA pLKO_005 2885 CDS 100% 13.200 10.560 N Zfp445 n/a
8 TRCN0000095577 GCCTTTCACAATCGCTCATTT pLKO.1 2514 CDS 100% 13.200 9.240 N Zfp445 n/a
9 TRCN0000363549 GCCTTTCACAATCGCTCATTT pLKO_005 2514 CDS 100% 13.200 9.240 N Zfp445 n/a
10 TRCN0000095578 GCCTGTGTAAAGACATCAGTA pLKO.1 1290 CDS 100% 4.950 3.465 N Zfp445 n/a
11 TRCN0000375791 AGAGGAGGAGGATGGCTATAT pLKO_005 380 CDS 100% 13.200 7.920 N Zfp445 n/a
12 TRCN0000375864 GCATGTCTGTAGCCTAGTAAG pLKO_005 3604 3UTR 100% 10.800 6.480 N Zfp445 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512122.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.