Transcript: Mouse XM_006512130.1

PREDICTED: Mus musculus family with sequence similarity 198, member A (Fam198a), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam198a (245050)
Length:
3964
CDS:
256..1944

Additional Resources:

NCBI RefSeq record:
XM_006512130.1
NBCI Gene record:
Fam198a (245050)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512130.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000179848 CAGGATCGTGAGCTTCTATTA pLKO.1 610 CDS 100% 13.200 9.240 N Fam198a n/a
2 TRCN0000184084 CAGAGAGAAGCCACGAATCTT pLKO.1 737 CDS 100% 5.625 3.938 N Fam198a n/a
3 TRCN0000179790 GACAGCATTTCTGTGACAGTA pLKO.1 2027 3UTR 100% 4.950 3.465 N Fam198a n/a
4 TRCN0000183475 GAGACACATTAAGAAGCACAA pLKO.1 1893 CDS 100% 4.050 2.835 N Fam198a n/a
5 TRCN0000196052 GCAGACTTTGAACTCTAGCCT pLKO.1 438 CDS 100% 0.750 0.525 N Fam198a n/a
6 TRCN0000217131 CATGGAACATGATGCACAAAC pLKO.1 999 CDS 100% 10.800 6.480 N Fam198a n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2396 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512130.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.