Transcript: Mouse XM_006512678.3

PREDICTED: Mus musculus adhesion G protein-coupled receptor G6 (Adgrg6), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Adgrg6 (215798)
Length:
7219
CDS:
766..4542

Additional Resources:

NCBI RefSeq record:
XM_006512678.3
NBCI Gene record:
Adgrg6 (215798)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512678.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000241670 ACGGAATAATGTATCGAATAT pLKO_005 2018 CDS 100% 13.200 18.480 N Adgrg6 n/a
2 TRCN0000241668 ACTTACATCCACCGCTATATT pLKO_005 3682 CDS 100% 15.000 10.500 N Adgrg6 n/a
3 TRCN0000241669 ATACAGCTGTCTAGGTTATAA pLKO_005 5581 3UTR 100% 15.000 10.500 N Adgrg6 n/a
4 TRCN0000241672 CTCACGTTCATTACCTATATT pLKO_005 3379 CDS 100% 15.000 10.500 N Adgrg6 n/a
5 TRCN0000241671 ACCCTAATGACTACCCTAATA pLKO_005 965 CDS 100% 13.200 9.240 N Adgrg6 n/a
6 TRCN0000193313 CGTCAGTTTGTTTCATATCTT pLKO.1 6957 3UTR 100% 5.625 3.938 N Adgrg6 n/a
7 TRCN0000193217 CAACTGTATCTATGACTCATT pLKO.1 1071 CDS 100% 4.950 3.465 N Adgrg6 n/a
8 TRCN0000176000 GCTCAATTCAACCTTTCAGAA pLKO.1 2103 CDS 100% 4.950 3.465 N Adgrg6 n/a
9 TRCN0000011560 CCAAGCAATAATGAATCGTAT pLKO.1 2890 CDS 100% 4.950 3.960 N ADGRG6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512678.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.