Transcript: Mouse XM_006512797.3

PREDICTED: Mus musculus enoyl Coenzyme A hydratase domain containing 1 (Echdc1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Echdc1 (52665)
Length:
3472
CDS:
1146..2270

Additional Resources:

NCBI RefSeq record:
XM_006512797.3
NBCI Gene record:
Echdc1 (52665)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512797.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000249154 TTTATGAGACTACCGTTAATA pLKO_005 1773 CDS 100% 15.000 21.000 N Echdc1 n/a
2 TRCN0000249155 AGTGGAGTGGCCTTATCTATG pLKO_005 1728 CDS 100% 10.800 8.640 N Echdc1 n/a
3 TRCN0000249151 ACTTACTACAGCATGTGATTT pLKO_005 1838 CDS 100% 13.200 9.240 N Echdc1 n/a
4 TRCN0000217214 CAAACAGGAGTGTCGCTTTAT pLKO.1 1422 CDS 100% 13.200 9.240 N Echdc1 n/a
5 TRCN0000249152 CAAACAGGAGTGTCGCTTTAT pLKO_005 1422 CDS 100% 13.200 9.240 N Echdc1 n/a
6 TRCN0000249153 CATTGGCATTCTGACGCTAAA pLKO_005 1535 CDS 100% 10.800 7.560 N Echdc1 n/a
7 TRCN0000433408 AGTTTCCTGGTGGATCCATTG pLKO_005 1492 CDS 100% 6.000 4.200 N ECHDC1 n/a
8 TRCN0000191025 CCTGCAAATTTAGAGGCTATT pLKO.1 2223 CDS 100% 10.800 6.480 N Echdc1 n/a
9 TRCN0000190080 GCCTCATTATCCATGGAGCAA pLKO.1 1648 CDS 100% 2.640 1.584 N Echdc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512797.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.