Transcript: Mouse XM_006514006.3

PREDICTED: Mus musculus thymocyte expressed, positive selection associated 1 (Tespa1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tespa1 (67596)
Length:
2719
CDS:
361..1737

Additional Resources:

NCBI RefSeq record:
XM_006514006.3
NBCI Gene record:
Tespa1 (67596)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514006.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000266839 TCTCGTATCCCTGCAAGATTT pLKO_005 901 CDS 100% 13.200 18.480 N Tespa1 n/a
2 TRCN0000266837 ACATGAGCTGACCAATCTTTA pLKO_005 1716 CDS 100% 13.200 9.240 N Tespa1 n/a
3 TRCN0000266838 ATCTAACTACAGTGGATATTC pLKO_005 609 CDS 100% 13.200 9.240 N Tespa1 n/a
4 TRCN0000266836 CAGGTCCACAGTACCACATAA pLKO_005 1499 CDS 100% 13.200 9.240 N Tespa1 n/a
5 TRCN0000216745 GTGGGTTCTACAGGACATTAA pLKO.1 1545 CDS 100% 13.200 9.240 N Tespa1 n/a
6 TRCN0000217907 GAAGAATCAGGGCAATCTAAC pLKO.1 595 CDS 100% 10.800 7.560 N Tespa1 n/a
7 TRCN0000216744 GATCGGCTATCATCATCTTAC pLKO.1 1255 CDS 100% 10.800 7.560 N Tespa1 n/a
8 TRCN0000179914 CCACAAAGACACATCTCGTAT pLKO.1 888 CDS 100% 4.950 3.465 N Tespa1 n/a
9 TRCN0000266835 CTTGATCTTGGCTCTAGTTTG pLKO_005 748 CDS 100% 10.800 6.480 N Tespa1 n/a
10 TRCN0000179915 CCATCCAACATGTTCTGGAAT pLKO.1 1117 CDS 100% 4.950 2.970 N Tespa1 n/a
11 TRCN0000268528 GAAGGGAATCCAATCAATAAA pLKO_005 520 CDS 100% 15.000 10.500 N TESPA1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514006.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.