Transcript: Mouse XM_006514186.3

PREDICTED: Mus musculus CCR4-NOT transcription complex, subunit 2 (Cnot2), transcript variant X14, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cnot2 (72068)
Length:
2350
CDS:
74..1315

Additional Resources:

NCBI RefSeq record:
XM_006514186.3
NBCI Gene record:
Cnot2 (72068)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514186.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000375964 TGACGACAGCAAATCTAATTT pLKO_005 577 CDS 100% 15.000 21.000 N Cnot2 n/a
2 TRCN0000238810 TTACCTGGTTCCAGCTATAAA pLKO_005 539 CDS 100% 15.000 21.000 N Cnot2 n/a
3 TRCN0000233435 GTGAAGATCCTTCTCGTATTT pLKO_005 1736 3UTR 100% 13.200 18.480 N Cnot2 n/a
4 TRCN0000234899 GTGAAGATCCTTCTCGTATTT pLKO_005 1736 3UTR 100% 13.200 18.480 N CNOT2 n/a
5 TRCN0000233433 AGCGTTAGCTGACCGGAATAG pLKO_005 385 CDS 100% 10.800 15.120 N Cnot2 n/a
6 TRCN0000103582 CGAGTTACTAACATTCCTCAA pLKO.1 716 CDS 100% 4.050 5.670 N Cnot2 n/a
7 TRCN0000103584 CGGCAACCCAACTCCATTAAT pLKO.1 418 CDS 100% 15.000 12.000 N Cnot2 n/a
8 TRCN0000233434 CTCAATACACAACGAAGATTT pLKO_005 511 CDS 100% 13.200 10.560 N Cnot2 n/a
9 TRCN0000103581 GCAATCAAACTTGGCCGATAT pLKO.1 989 CDS 100% 10.800 8.640 N Cnot2 n/a
10 TRCN0000103580 GCATTGTTCATTGTAGCACTA pLKO.1 1679 3UTR 100% 4.050 3.240 N Cnot2 n/a
11 TRCN0000375884 CCATGTTCCATCAGAATATTT pLKO_005 937 CDS 100% 15.000 10.500 N Cnot2 n/a
12 TRCN0000375965 GGTCCTGCCTTACCAATTATG pLKO_005 1457 3UTR 100% 13.200 9.240 N Cnot2 n/a
13 TRCN0000015132 CAGGTGACAAACAGCATGTTT pLKO.1 149 CDS 100% 5.625 3.938 N CNOT2 n/a
14 TRCN0000015131 CCGTGATTGGAGATACCACAA pLKO.1 1090 CDS 100% 4.050 2.835 N CNOT2 n/a
15 TRCN0000103583 CCTTTCAGATTTCCCAGCGTT pLKO.1 370 CDS 100% 2.640 1.848 N Cnot2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514186.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.