Transcript: Mouse XM_006514766.3

PREDICTED: Mus musculus SERTA domain containing 2 (Sertad2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sertad2 (58172)
Length:
5525
CDS:
310..1239

Additional Resources:

NCBI RefSeq record:
XM_006514766.3
NBCI Gene record:
Sertad2 (58172)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514766.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219543 TTGCAGAAGACTGTCTTAATT pLKO.1 484 CDS 100% 15.000 21.000 N Sertad2 n/a
2 TRCN0000234193 TTGCAGAAGACTGTCTTAATT pLKO_005 484 CDS 100% 15.000 21.000 N Sertad2 n/a
3 TRCN0000234191 ACCTTACAGCGCCAGACTATC pLKO_005 409 CDS 100% 10.800 15.120 N Sertad2 n/a
4 TRCN0000134435 GCACAAGGATTAAGTTGGAAA pLKO.1 1536 3UTR 100% 4.950 3.960 N SERTAD2 n/a
5 TRCN0000219544 GGGCCTTTCTGGCCAATTAAA pLKO.1 3241 3UTR 100% 15.000 10.500 N Sertad2 n/a
6 TRCN0000234194 GGGCCTTTCTGGCCAATTAAA pLKO_005 3241 3UTR 100% 15.000 10.500 N Sertad2 n/a
7 TRCN0000219542 TCCCTTATGAAACTGTATAAC pLKO.1 439 CDS 100% 13.200 9.240 N Sertad2 n/a
8 TRCN0000234192 TCCCTTATGAAACTGTATAAC pLKO_005 439 CDS 100% 13.200 9.240 N Sertad2 n/a
9 TRCN0000218528 ACATCTTGTTTGCTGACATTG pLKO_005 1028 CDS 100% 10.800 7.560 N Sertad2 n/a
10 TRCN0000134863 CCAGACTATCTTCAACATTTC pLKO.1 420 CDS 100% 10.800 7.560 N SERTAD2 n/a
11 TRCN0000192751 CACAGATGACTCACGATTCAT pLKO.1 939 CDS 100% 5.625 3.938 N Sertad2 n/a
12 TRCN0000190314 CCTTACAGCAATCAGCCTGTT pLKO.1 1147 CDS 100% 4.050 2.835 N Sertad2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514766.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.