Transcript: Mouse XM_006514977.3

PREDICTED: Mus musculus lipin 1 (Lpin1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lpin1 (14245)
Length:
4331
CDS:
19..2973

Additional Resources:

NCBI RefSeq record:
XM_006514977.3
NBCI Gene record:
Lpin1 (14245)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514977.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098297 GCCGTGTCATATCAGCAATTT pLKO.1 1759 CDS 100% 13.200 18.480 N Lpin1 n/a
2 TRCN0000098299 GCCCAGTTGGACAATCTCAAA pLKO.1 682 CDS 100% 4.950 6.930 N Lpin1 n/a
3 TRCN0000305830 CTTGACGCGACCGAGCATTAA pLKO_005 2969 CDS 100% 13.200 9.240 N Lpin1 n/a
4 TRCN0000305768 AGTAAGGCCCAGACGGAAATG pLKO_005 1300 CDS 100% 10.800 7.560 N Lpin1 n/a
5 TRCN0000098298 CCAGTGTTTGACAGACATCAA pLKO.1 2631 CDS 100% 4.950 3.465 N Lpin1 n/a
6 TRCN0000324696 CCAGTGTTTGACAGACATCAA pLKO_005 2631 CDS 100% 4.950 3.465 N Lpin1 n/a
7 TRCN0000098296 CGCCAAAGAATAACCTGGAAA pLKO.1 1091 CDS 100% 4.950 3.465 N Lpin1 n/a
8 TRCN0000305829 TGTGGAATTGGGACGACAAAG pLKO_005 2300 CDS 100% 10.800 6.480 N Lpin1 n/a
9 TRCN0000098295 GCTCTTTAATTGCTTTGGTTA pLKO.1 3545 3UTR 100% 4.950 2.970 N Lpin1 n/a
10 TRCN0000324634 GCTCTTTAATTGCTTTGGTTA pLKO_005 3545 3UTR 100% 4.950 2.970 N Lpin1 n/a
11 TRCN0000150763 GCAGAACTCTTCCTAATGATA pLKO.1 791 CDS 100% 5.625 3.938 N LPIN1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514977.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.