Transcript: Mouse XM_006514993.1

PREDICTED: Mus musculus laminin B1 (Lamb1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lamb1 (16777)
Length:
5703
CDS:
192..5552

Additional Resources:

NCBI RefSeq record:
XM_006514993.1
NBCI Gene record:
Lamb1 (16777)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514993.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094314 CGCAGGTAGAAGTGAAATTAA pLKO.1 3985 CDS 100% 15.000 21.000 N Lamb1 n/a
2 TRCN0000309482 CGCAGGTAGAAGTGAAATTAA pLKO_005 3985 CDS 100% 15.000 21.000 N Lamb1 n/a
3 TRCN0000311301 TCGACAGAAGGAGAGGTAATA pLKO_005 789 CDS 100% 13.200 10.560 N Lamb1 n/a
4 TRCN0000094315 CCAAGGATACAGAATCTATTA pLKO.1 855 CDS 100% 13.200 9.240 N Lamb1 n/a
5 TRCN0000309473 CCAAGGATACAGAATCTATTA pLKO_005 855 CDS 100% 13.200 9.240 N Lamb1 n/a
6 TRCN0000094317 GCTCCCTCCTTAAGGACATAA pLKO.1 5497 CDS 100% 13.200 9.240 N Lamb1 n/a
7 TRCN0000305393 TCATCTGTGACTCTCGATATT pLKO_005 754 CDS 100% 13.200 9.240 N Lamb1 n/a
8 TRCN0000094318 GACCCTTATAGTCCAAGGATA pLKO.1 843 CDS 100% 4.950 3.465 N Lamb1 n/a
9 TRCN0000309408 GACCCTTATAGTCCAAGGATA pLKO_005 843 CDS 100% 4.950 3.465 N Lamb1 n/a
10 TRCN0000094316 GCTGTTTATGATATGGTGGTT pLKO.1 972 CDS 100% 2.640 1.848 N Lamb1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514993.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.