Transcript: Mouse XM_006515066.3

PREDICTED: Mus musculus ankyrin repeat and MYND domain containing 2 (Ankmy2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ankmy2 (217473)
Length:
2729
CDS:
505..1839

Additional Resources:

NCBI RefSeq record:
XM_006515066.3
NBCI Gene record:
Ankmy2 (217473)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006515066.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216612 GACTGGATTATTACACTAAAC pLKO.1 935 CDS 100% 10.800 15.120 N Ankmy2 n/a
2 TRCN0000176639 CCTATCCAGAAACTGTGATTT pLKO.1 2567 3UTR 100% 13.200 10.560 N Ankmy2 n/a
3 TRCN0000278647 CCTATCCAGAAACTGTGATTT pLKO_005 2567 3UTR 100% 13.200 10.560 N Ankmy2 n/a
4 TRCN0000198068 CGGAAGTTTCCATACTGTGAA pLKO.1 1330 CDS 100% 4.950 3.960 N Ankmy2 n/a
5 TRCN0000176904 GTCAATGAAGATCAACCAGAA pLKO.1 1687 CDS 100% 4.050 3.240 N Ankmy2 n/a
6 TRCN0000278645 GTCAATGAAGATCAACCAGAA pLKO_005 1687 CDS 100% 4.050 3.240 N Ankmy2 n/a
7 TRCN0000177902 CCGTCTTGATTTCCTGTTGAT pLKO.1 1993 3UTR 100% 4.950 3.465 N Ankmy2 n/a
8 TRCN0000278648 CCGTCTTGATTTCCTGTTGAT pLKO_005 1993 3UTR 100% 4.950 3.465 N Ankmy2 n/a
9 TRCN0000177903 CATGCAGCCTATAAAGGGAAA pLKO.1 670 CDS 100% 4.050 2.835 N Ankmy2 n/a
10 TRCN0000176946 GAAATGCATTACCTTCCTCAA pLKO.1 1206 CDS 100% 4.050 2.835 N Ankmy2 n/a
11 TRCN0000297532 GAAATGCATTACCTTCCTCAA pLKO_005 1206 CDS 100% 4.050 2.835 N Ankmy2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006515066.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.