Transcript: Mouse XM_006516248.3

PREDICTED: Mus musculus aarF domain containing kinase 1 (Adck1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Adck1 (72113)
Length:
1985
CDS:
104..1459

Additional Resources:

NCBI RefSeq record:
XM_006516248.3
NBCI Gene record:
Adck1 (72113)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006516248.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000023848 GAATTTGTAGAGGGAGGTCAA pLKO.1 671 CDS 100% 4.050 5.670 N Adck1 n/a
2 TRCN0000023845 GACTCAGAGATTCGCAATAAT pLKO.1 1088 CDS 100% 15.000 12.000 N Adck1 n/a
3 TRCN0000368227 GGACTCAGAGATTCGCAATAA pLKO_005 1087 CDS 100% 13.200 9.240 N Adck1 n/a
4 TRCN0000361859 GGAGAGTGAGATGGGATAAAG pLKO_005 1648 3UTR 100% 13.200 9.240 N Adck1 n/a
5 TRCN0000023847 CTGTGGCAGATCAACCTTCAT pLKO.1 1349 CDS 100% 4.950 3.465 N Adck1 n/a
6 TRCN0000197154 GTCTCTGATCTGGACTGACAT pLKO.1 934 CDS 100% 4.950 3.465 N ADCK1 n/a
7 TRCN0000352787 GTCTCTGATCTGGACTGACAT pLKO_005 934 CDS 100% 4.950 3.465 N ADCK1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006516248.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.