Transcript: Mouse XM_006516328.3

PREDICTED: Mus musculus zinc finger CCCH type containing 14 (Zc3h14), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zc3h14 (75553)
Length:
2501
CDS:
204..2234

Additional Resources:

NCBI RefSeq record:
XM_006516328.3
NBCI Gene record:
Zc3h14 (75553)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006516328.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000194227 GCAGCGTAGAAGACACTTATA pLKO.1 901 CDS 100% 13.200 18.480 N Zc3h14 n/a
2 TRCN0000216150 CAAGCTAACAAGAATCTAATT pLKO.1 1146 CDS 100% 13.200 10.560 N Zc3h14 n/a
3 TRCN0000215959 CTCTGAAGATGTGATTGATAT pLKO.1 602 CDS 100% 13.200 9.240 N Zc3h14 n/a
4 TRCN0000341256 GACTGAGCCCTCTAGTCTAAA pLKO_005 332 CDS 100% 13.200 9.240 N Zc3h14 n/a
5 TRCN0000341194 GTATGGCTCCATGGTGTATTA pLKO_005 291 CDS 100% 13.200 9.240 N Zc3h14 n/a
6 TRCN0000128105 CCGTTACTTCCCTGCTTGTAA pLKO.1 2069 CDS 100% 5.625 3.938 N ZC3H14 n/a
7 TRCN0000343697 CCGTTACTTCCCTGCTTGTAA pLKO_005 2069 CDS 100% 5.625 3.938 N ZC3H14 n/a
8 TRCN0000128765 CCAGGATACATGTCAGATCAA pLKO.1 1611 CDS 100% 4.950 3.465 N ZC3H14 n/a
9 TRCN0000193981 GCCTTCAAACAAGAGCAGTTT pLKO.1 386 CDS 100% 4.950 3.465 N Zc3h14 n/a
10 TRCN0000173125 CACCTTATGCAGACACGAGAT pLKO.1 1524 CDS 100% 4.050 2.835 N Zc3h14 n/a
11 TRCN0000341193 CACCTTATGCAGACACGAGAT pLKO_005 1524 CDS 100% 4.050 2.835 N Zc3h14 n/a
12 TRCN0000129229 CCATGCAGACACAAGATCATT pLKO.1 1406 CDS 100% 5.625 3.375 N ZC3H14 n/a
13 TRCN0000343635 CCATGCAGACACAAGATCATT pLKO_005 1406 CDS 100% 5.625 3.375 N ZC3H14 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006516328.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.