Transcript: Mouse XM_006517038.1

PREDICTED: Mus musculus unc-5 netrin receptor A (Unc5a), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Unc5a (107448)
Length:
3824
CDS:
246..2777

Additional Resources:

NCBI RefSeq record:
XM_006517038.1
NBCI Gene record:
Unc5a (107448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006517038.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432661 GGTCCGGATCAACGTATCAAG pLKO_005 557 CDS 100% 4.950 6.930 N Unc5a n/a
2 TRCN0000071921 AGCAAGGCATTGTGCTACCTT pLKO.1 736 CDS 100% 3.000 2.400 N Unc5a n/a
3 TRCN0000440391 CCCAAGTTCCAGCTCTCTAAT pLKO_005 1416 CDS 100% 13.200 9.240 N Unc5a n/a
4 TRCN0000437502 GGACACGAGGTTTGCTGAAAT pLKO_005 2432 CDS 100% 13.200 9.240 N Unc5a n/a
5 TRCN0000071918 GTGGGCCTTATGCAAACATTT pLKO.1 3186 3UTR 100% 13.200 9.240 N Unc5a n/a
6 TRCN0000071920 CAGAGCTTCAACATCAACTTT pLKO.1 2400 CDS 100% 5.625 3.938 N Unc5a n/a
7 TRCN0000071922 CGAACTCTAGCCCAGAAACTT pLKO.1 2580 CDS 100% 5.625 3.938 N Unc5a n/a
8 TRCN0000071919 CGAGTACAACATCCGAGTGTA pLKO.1 2066 CDS 100% 4.950 3.465 N Unc5a n/a
9 TRCN0000428264 GCCGGCTGATGATCCCTAATA pLKO_005 1603 CDS 100% 13.200 10.560 N UNC5A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006517038.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.