Transcript: Mouse XM_006517459.3

PREDICTED: Mus musculus N(alpha)-acetyltransferase 35, NatC auxiliary subunit (Naa35), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Naa35 (78689)
Length:
2743
CDS:
294..2471

Additional Resources:

NCBI RefSeq record:
XM_006517459.3
NBCI Gene record:
Naa35 (78689)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006517459.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216534 GTCAATGACATACGGATTTAA pLKO.1 821 CDS 100% 15.000 21.000 N Naa35 n/a
2 TRCN0000336152 AGTCAATGACATACGGATTTA pLKO_005 820 CDS 100% 13.200 18.480 N Naa35 n/a
3 TRCN0000216644 CTTAGGAACCTGGGTTCTTTA pLKO.1 1754 CDS 100% 13.200 18.480 N Naa35 n/a
4 TRCN0000336090 TGATCTGCAAAGGCGAGTAAA pLKO_005 899 CDS 100% 13.200 18.480 N Naa35 n/a
5 TRCN0000177999 GTCGTGAACTTACCAAACTTA pLKO.1 1317 CDS 100% 5.625 7.875 N Naa35 n/a
6 TRCN0000336150 GTCGTGAACTTACCAAACTTA pLKO_005 1317 CDS 100% 5.625 7.875 N Naa35 n/a
7 TRCN0000198013 CGCTTCATACTATGTTGTTGA pLKO.1 1702 CDS 100% 4.950 6.930 N Naa35 n/a
8 TRCN0000198108 CCATCCAATTATGATGGGTTT pLKO.1 1172 CDS 100% 0.405 0.567 N Naa35 n/a
9 TRCN0000178026 GCCTGAACTGATAGGAATAAT pLKO.1 599 CDS 100% 15.000 10.500 N Naa35 n/a
10 TRCN0000336149 GCCTGAACTGATAGGAATAAT pLKO_005 599 CDS 100% 15.000 10.500 N Naa35 n/a
11 TRCN0000215515 GAGAAGAAATGGTCAACTATT pLKO.1 1258 CDS 100% 13.200 9.240 N Naa35 n/a
12 TRCN0000336153 GCCACACATGGTGACAGAAAG pLKO_005 2520 3UTR 100% 10.800 7.560 N Naa35 n/a
13 TRCN0000178025 GCATGAGTACTACTACATCTA pLKO.1 1838 CDS 100% 4.950 3.465 N Naa35 n/a
14 TRCN0000181510 GTGACAGAAAGTGGATCTCTT pLKO.1 2530 3UTR 100% 4.950 3.465 N Naa35 n/a
15 TRCN0000215429 GACTTCTCTGTTCACAAATAT pLKO.1 2427 CDS 100% 15.000 9.000 N Naa35 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006517459.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.