Transcript: Mouse XM_006518667.3

PREDICTED: Mus musculus interleukin 17 receptor D (Il17rd), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Il17rd (171463)
Length:
8211
CDS:
116..2311

Additional Resources:

NCBI RefSeq record:
XM_006518667.3
NBCI Gene record:
Il17rd (171463)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006518667.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000066940 CGGATCAGATAGAAACATCTT pLKO.1 2145 CDS 100% 4.950 3.960 N Il17rd n/a
2 TRCN0000192370 CGGAAGAGAAGGAAGAATATT pLKO.1 7701 3UTR 100% 15.000 10.500 N Il17rd n/a
3 TRCN0000066942 GCCTTTCCTGAATATGAAATT pLKO.1 559 CDS 100% 13.200 9.240 N Il17rd n/a
4 TRCN0000066939 GCTCCCTGTATGTTGCCATTT pLKO.1 1707 CDS 100% 10.800 7.560 N Il17rd n/a
5 TRCN0000066938 CCAGCCTTCTAAGGGATACTT pLKO.1 2462 3UTR 100% 5.625 3.938 N Il17rd n/a
6 TRCN0000200732 GAAGCATATCAAGTTTGAACA pLKO.1 7817 3UTR 100% 4.950 3.465 N Il17rd n/a
7 TRCN0000066941 GCACAACATCACCTTCAGATA pLKO.1 274 CDS 100% 4.950 3.465 N Il17rd n/a
8 TRCN0000200704 GCATATCAAGTTTGAACAGAA pLKO.1 7820 3UTR 100% 4.950 3.465 N Il17rd n/a
9 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 5815 3UTR 100% 4.050 2.025 Y Mtif2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006518667.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.