Transcript: Mouse XM_006519685.1

PREDICTED: Mus musculus cilia and flagella associated protein 70 (Cfap70), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cfap70 (76670)
Length:
3759
CDS:
984..3491

Additional Resources:

NCBI RefSeq record:
XM_006519685.1
NBCI Gene record:
Cfap70 (76670)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006519685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346340 GCTGCAAGCGCCTAGTATAAA pLKO_005 1352 CDS 100% 15.000 21.000 N Cfap70 n/a
2 TRCN0000346341 TGTGACAAATGGATATGATTT pLKO_005 207 5UTR 100% 13.200 18.480 N Cfap70 n/a
3 TRCN0000346338 GGACCCAGTTGTGAGTATTAT pLKO_005 2901 CDS 100% 15.000 10.500 N Cfap70 n/a
4 TRCN0000346337 AGTCTTGATGTGAAGGTATTT pLKO_005 601 5UTR 100% 13.200 9.240 N Cfap70 n/a
5 TRCN0000346412 CTCCTACCCAGCACGTTATTG pLKO_005 2770 CDS 100% 13.200 9.240 N Cfap70 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006519685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.