Transcript: Mouse XM_006520927.2

PREDICTED: Mus musculus G protein-coupled receptor 20 (Gpr20), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gpr20 (239530)
Length:
8084
CDS:
43..1119

Additional Resources:

NCBI RefSeq record:
XM_006520927.2
NBCI Gene record:
Gpr20 (239530)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006520927.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000026135 ACTGTGGCCTAACGTACCTAA pLKO.1 834 CDS 100% 4.950 6.930 N Gpr20 n/a
2 TRCN0000026113 CACACGCTTTGCTGTCTTCTA pLKO.1 357 CDS 100% 4.950 3.465 N Gpr20 n/a
3 TRCN0000026129 CCTCAACATGCACTGTTCCAT pLKO.1 429 CDS 100% 3.000 2.100 N Gpr20 n/a
4 TRCN0000026084 GCACTGTATGTCTTCTGCTGT pLKO.1 256 CDS 100% 2.640 1.848 N Gpr20 n/a
5 TRCN0000026111 CCACACCCTTACCCAGCCTTT pLKO.1 1077 CDS 100% 1.350 0.810 N Gpr20 n/a
6 TRCN0000008842 TGCTGGTCATCAGCGTGTTTA pLKO.1 665 CDS 100% 13.200 9.240 N GPR20 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006520927.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.