Transcript: Mouse XM_006525031.1

PREDICTED: Mus musculus heat shock transcription factor 2 binding protein (Hsf2bp), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hsf2bp (74377)
Length:
1976
CDS:
270..1286

Additional Resources:

NCBI RefSeq record:
XM_006525031.1
NBCI Gene record:
Hsf2bp (74377)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006525031.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239570 GACGACGGAAGTGATGCAAAT pLKO_005 374 CDS 100% 10.800 15.120 N Hsf2bp n/a
2 TRCN0000239566 TGCCGGAACATGGAATCTAAA pLKO_005 312 CDS 100% 13.200 10.560 N Hsf2bp n/a
3 TRCN0000017474 CGGGACTTCTTACCCAGAATA pLKO.1 396 CDS 100% 13.200 9.240 N HSF2BP n/a
4 TRCN0000239569 GGATGTCAAGGAGGTTGATTC pLKO_005 791 CDS 100% 10.800 7.560 N Hsf2bp n/a
5 TRCN0000239568 GTATAATGTGAGCATCAATTC pLKO_005 992 CDS 100% 10.800 7.560 N Hsf2bp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006525031.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.