Transcript: Mouse XM_006525089.3

PREDICTED: Mus musculus dishevelled associated activator of morphogenesis 2 (Daam2), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Daam2 (76441)
Length:
6461
CDS:
670..3957

Additional Resources:

NCBI RefSeq record:
XM_006525089.3
NBCI Gene record:
Daam2 (76441)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006525089.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000120537 CCCGACATAATGAGAGCTCAA pLKO.1 2195 CDS 100% 4.050 5.670 N Daam2 n/a
2 TRCN0000120539 GCCCAGAACTGTATCATTCTT pLKO.1 2785 CDS 100% 5.625 3.938 N Daam2 n/a
3 TRCN0000120538 CCTCAGAGCTAAAGCACCTAT pLKO.1 3332 CDS 100% 4.950 3.465 N Daam2 n/a
4 TRCN0000120540 GACAAGAGGAACCAAGTTGTA pLKO.1 1039 CDS 100% 4.950 3.465 N Daam2 n/a
5 TRCN0000158225 CCTGATCATGATCCTGGAGAA pLKO.1 3285 CDS 100% 4.050 2.835 N DAAM2 n/a
6 TRCN0000280899 CCTGATCATGATCCTGGAGAA pLKO_005 3285 CDS 100% 4.050 2.835 N DAAM2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006525089.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.