Transcript: Mouse XM_006525858.2

PREDICTED: Mus musculus family with sequence similarity 13, member B (Fam13b), transcript variant X11, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam13b (225358)
Length:
3686
CDS:
284..1615

Additional Resources:

NCBI RefSeq record:
XM_006525858.2
NBCI Gene record:
Fam13b (225358)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006525858.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000340836 AGCCAATCCGAAGGTATTAAA pLKO_005 670 CDS 100% 15.000 21.000 N Fam13b n/a
2 TRCN0000340835 GTATTATCTCATCGTAGTTTA pLKO_005 422 CDS 100% 13.200 18.480 N Fam13b n/a
3 TRCN0000340770 TAGTAGCAAGATACGTGATTT pLKO_005 100 5UTR 100% 13.200 18.480 N Fam13b n/a
4 TRCN0000340834 GCGTTGGATTTCTCGTCAAAG pLKO_005 482 CDS 100% 10.800 15.120 N Fam13b n/a
5 TRCN0000173518 GAAAGAGAAGACGCCATCGAA pLKO.1 865 CDS 100% 3.000 4.200 N Fam13b n/a
6 TRCN0000193971 GCTGATTACCAAACGGTTGAA pLKO.1 901 CDS 100% 4.950 3.960 N Fam13b n/a
7 TRCN0000193396 CTCCAGTATTATCTCATCGTA pLKO.1 417 CDS 100% 3.000 2.400 N Fam13b n/a
8 TRCN0000176272 CAAGGAAAGCTGTTCCACATT pLKO.1 1753 3UTR 100% 4.950 3.465 N Fam13b n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006525858.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.