Transcript: Mouse XM_006526749.3

PREDICTED: Mus musculus paired box 2 (Pax2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pax2 (18504)
Length:
4400
CDS:
1229..2620

Additional Resources:

NCBI RefSeq record:
XM_006526749.3
NBCI Gene record:
Pax2 (18504)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006526749.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431117 CGTTGTGACCGGTCGTGATAT pLKO_005 2299 CDS 100% 13.200 18.480 N Pax2 n/a
2 TRCN0000085464 TGCCGAATACAAGCGACAGAA pLKO.1 1618 CDS 100% 4.950 3.960 N Pax2 n/a
3 TRCN0000085466 ACACTGATCCTGCCCACATTA pLKO.1 1947 CDS 100% 13.200 9.240 N Pax2 n/a
4 TRCN0000428814 AGGCATCAGAGCACATCAAAT pLKO_005 2154 CDS 100% 13.200 9.240 N Pax2 n/a
5 TRCN0000417799 TTACATCTGGTCTGGACTTTA pLKO_005 1982 CDS 100% 13.200 9.240 N Pax2 n/a
6 TRCN0000015842 CAGGCATCAGAGCACATCAAA pLKO.1 2153 CDS 100% 5.625 3.938 N PAX2 n/a
7 TRCN0000015840 CCCAAAGTGGTGGACAAGATT pLKO.1 1598 CDS 100% 5.625 3.938 N PAX2 n/a
8 TRCN0000433105 GAAGCTCTGGATCGAGTCTTT pLKO_005 2105 CDS 100% 4.950 3.465 N Pax2 n/a
9 TRCN0000085463 GATGAAGTCAAGTCCAGTCTA pLKO.1 2222 CDS 100% 4.950 3.465 N Pax2 n/a
10 TRCN0000085467 TCCTTCCTATCCCGATGTCTT pLKO.1 2131 CDS 100% 4.950 3.465 N Pax2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006526749.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.