Transcript: Mouse XM_006527136.2

PREDICTED: Mus musculus solute carrier family 22, member 30 (Slc22a30), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc22a30 (319800)
Length:
3359
CDS:
207..1523

Additional Resources:

NCBI RefSeq record:
XM_006527136.2
NBCI Gene record:
Slc22a30 (319800)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527136.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000101997 GCTAGTATCGGATACATGATA pLKO.1 927 CDS 100% 5.625 3.375 N Slc22a30 n/a
2 TRCN0000101998 TGCTGCTAGTATCGGATACAT pLKO.1 923 CDS 100% 5.625 3.375 N Slc22a30 n/a
3 TRCN0000101996 CCCATCTTACGAAAGCGGATA pLKO.1 1236 CDS 100% 4.050 2.430 N Slc22a30 n/a
4 TRCN0000070144 CCTGTCCTTTATGAGATATTT pLKO.1 1262 CDS 100% 15.000 7.500 Y Slc22a28 n/a
5 TRCN0000101999 TCCTGTCCTTTATGAGATATT pLKO.1 1261 CDS 100% 13.200 6.600 Y Slc22a30 n/a
6 TRCN0000101995 GCAAGTATGAAGAATGAACTT pLKO.1 1170 CDS 100% 4.950 2.475 Y Slc22a30 n/a
7 TRCN0000070147 GCTGTATTTGTACCTCAAGAA pLKO.1 1473 CDS 100% 4.950 2.475 Y Slc22a28 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527136.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.