Transcript: Mouse XM_006527140.3

PREDICTED: Mus musculus amyloid beta (A4) precursor protein binding, family A, member 1 (Apba1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Apba1 (319924)
Length:
6647
CDS:
335..2830

Additional Resources:

NCBI RefSeq record:
XM_006527140.3
NBCI Gene record:
Apba1 (319924)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527140.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000093473 CATCGGATCATCGAAATCAAT pLKO.1 2672 CDS 100% 5.625 7.875 N Apba1 n/a
2 TRCN0000093472 GAGCATCATTAAGGGCTTAAA pLKO.1 2485 CDS 100% 13.200 9.240 N Apba1 n/a
3 TRCN0000093470 CCTCCACAAATAAAGAGTCAA pLKO.1 1629 CDS 100% 4.950 3.465 N Apba1 n/a
4 TRCN0000093471 CCAGAGCATCATTAAGGGCTT pLKO.1 2482 CDS 100% 2.160 1.512 N Apba1 n/a
5 TRCN0000093469 GCCCACATCTTTAAGGATGTT pLKO.1 3360 3UTR 100% 0.495 0.347 N Apba1 n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3678 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527140.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.