Transcript: Mouse XM_006527172.2

PREDICTED: Mus musculus cytochrome P450, family 2, subfamily c, polypeptide 54 (Cyp2c54), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Cyp2c54 (404195)
Length:
1628
CDS:
35..1330

Additional Resources:

NCBI RefSeq record:
XM_006527172.2
NBCI Gene record:
Cyp2c54 (404195)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527172.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000250520 ATGGGCATTGGATTTAGTAAT pLKO_005 362 CDS 100% 13.200 9.240 N Cyp2c54 n/a
2 TRCN0000250521 CTCATGACTCTGCGGAATTTA pLKO_005 416 CDS 100% 15.000 9.000 N Cyp2c54 n/a
3 TRCN0000258045 TTGCAAATCCTGCACAAATAT pLKO_005 1441 3UTR 100% 15.000 9.000 N Cyp2c54 n/a
4 TRCN0000250523 ATGTCATCTGCTCAATTATTT pLKO_005 561 CDS 100% 15.000 7.500 Y Cyp2c54 n/a
5 TRCN0000250522 GCCAATCCTTCACCAATTTAT pLKO_005 186 CDS 100% 15.000 7.500 Y Cyp2c54 n/a
6 TRCN0000201672 GCGGAATTTAGGCATGGGAAA pLKO.1 427 CDS 100% 4.050 2.025 Y Cyp2c54 n/a
7 TRCN0000064107 CCTGTGACATTAAATTCAGAA pLKO.1 969 CDS 100% 4.950 2.475 Y CYP2C9 n/a
8 TRCN0000193255 CCTGTGACATTAAATTCAGAA pLKO.1 969 CDS 100% 4.950 2.475 Y Cyp2c38 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527172.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.