Transcript: Mouse XM_006527475.3

PREDICTED: Mus musculus tudor domain containing 1 (Tdrd1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tdrd1 (83561)
Length:
4887
CDS:
56..3577

Additional Resources:

NCBI RefSeq record:
XM_006527475.3
NBCI Gene record:
Tdrd1 (83561)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527475.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437454 GACCAACTCCAGGCGATATTA pLKO_005 2465 CDS 100% 15.000 21.000 N Tdrd1 n/a
2 TRCN0000434184 GGAATGTTAAAGTCCACTTTG pLKO_005 2412 CDS 100% 10.800 15.120 N Tdrd1 n/a
3 TRCN0000192852 GATGACTTGAATCAGTCCTTA pLKO.1 2267 CDS 100% 4.950 6.930 N Tdrd1 n/a
4 TRCN0000191995 GCAAATGTACTAGAGATCATA pLKO.1 2864 CDS 100% 5.625 4.500 N Tdrd1 n/a
5 TRCN0000217886 GTTTCCTCCTTCTGCCATAAA pLKO.1 1156 CDS 100% 13.200 9.240 N Tdrd1 n/a
6 TRCN0000217838 CTCTAGTCAAGGAGATCTTAC pLKO.1 2385 CDS 100% 10.800 7.560 N Tdrd1 n/a
7 TRCN0000190677 GCAGACCTGCTAATCAACATA pLKO.1 2757 CDS 100% 5.625 3.938 N Tdrd1 n/a
8 TRCN0000436261 GTGACAGTTGAGAGCAAGATT pLKO_005 1451 CDS 100% 5.625 3.938 N Tdrd1 n/a
9 TRCN0000189725 GCTCAGTTCTCAGAGGATGAT pLKO.1 1691 CDS 100% 4.950 3.465 N Tdrd1 n/a
10 TRCN0000201238 GTTGCCAAATACACAGTTGAT pLKO.1 1001 CDS 100% 4.950 3.465 N Tdrd1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527475.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.