Transcript: Mouse XM_006527977.1

PREDICTED: Mus musculus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B (Ddx26b), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ints6l (236790)
Length:
3719
CDS:
382..3078

Additional Resources:

NCBI RefSeq record:
XM_006527977.1
NBCI Gene record:
Ints6l (236790)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527977.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000111188 CGTCTCCCTTAACTCAGTATA pLKO.1 1385 CDS 100% 13.200 18.480 N Ints6l n/a
2 TRCN0000312169 CGTCTCCCTTAACTCAGTATA pLKO_005 1385 CDS 100% 13.200 18.480 N Ints6l n/a
3 TRCN0000111187 GCTGACATAAAGCATCAATTA pLKO.1 2827 CDS 100% 13.200 18.480 N Ints6l n/a
4 TRCN0000312170 GCTGACATAAAGCATCAATTA pLKO_005 2827 CDS 100% 13.200 18.480 N Ints6l n/a
5 TRCN0000111185 GCTGCTATTTCGGTAACTTAA pLKO.1 3364 3UTR 100% 13.200 18.480 N Ints6l n/a
6 TRCN0000313211 CATTCACAAACCTGGTAATAA pLKO_005 2679 CDS 100% 15.000 12.000 N Ints6l n/a
7 TRCN0000111189 CGTTGGGATCAAAGGTTATTT pLKO.1 868 CDS 100% 15.000 10.500 N Ints6l n/a
8 TRCN0000152042 CGTTGGGATCAAAGGTTATTT pLKO.1 868 CDS 100% 15.000 10.500 N INTS6L n/a
9 TRCN0000313141 GATTGTGAACCAATGGTTATA pLKO_005 1330 CDS 100% 13.200 9.240 N Ints6l n/a
10 TRCN0000365037 GTTGGGATCAAAGGTTATTTG pLKO_005 869 CDS 100% 13.200 9.240 N INTS6L n/a
11 TRCN0000370037 TTGCACAAATGGGTAACTATC pLKO_005 2144 CDS 100% 10.800 7.560 N INTS6L n/a
12 TRCN0000153839 CCATCACAGATGGAAACAAGT pLKO.1 761 CDS 100% 4.950 3.465 N INTS6L n/a
13 TRCN0000111186 CCTTACAACTACCCAGTCTTA pLKO.1 1540 CDS 100% 4.950 3.465 N Ints6l n/a
14 TRCN0000153619 CGCTGTGGAGTTATTCTTGAA pLKO.1 471 CDS 100% 4.950 3.465 N INTS6L n/a
15 TRCN0000370076 GGATATCCATTTGGTTATTTA pLKO_005 1477 CDS 100% 15.000 21.000 N INTS6L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527977.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.