Transcript: Mouse XM_006528586.3

PREDICTED: Mus musculus transcription elongation factor A (SII)-like 3 (Tceal3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tceal3 (594844)
Length:
1176
CDS:
336..938

Additional Resources:

NCBI RefSeq record:
XM_006528586.3
NBCI Gene record:
Tceal3 (594844)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006528586.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000181220 CGCTTTCCCTGGTAGATACTT pLKO.1 992 3UTR 100% 5.625 3.938 N Tceal3 n/a
2 TRCN0000345613 AGCGCCCTGCTGAAGATTATG pLKO_005 628 CDS 100% 13.200 6.600 Y Tceal6 n/a
3 TRCN0000345545 CTTGCCAGGCCTGTGCTTTAA pLKO_005 1010 3UTR 100% 13.200 6.600 Y Tceal6 n/a
4 TRCN0000345544 GAGATGCACAGGATGCTTTAG pLKO_005 832 CDS 100% 10.800 5.400 Y Tceal6 n/a
5 TRCN0000163749 GAGGGAAAGCCAGAAGATGAA pLKO.1 378 CDS 100% 4.950 2.475 Y TCEAL6 n/a
6 TRCN0000178475 GATGAAGTAGAGCCTGAAGAT pLKO.1 393 CDS 100% 4.950 2.475 Y Tceal3 n/a
7 TRCN0000179624 GAAGATGAAGTAGAGCCTGAA pLKO.1 390 CDS 100% 4.050 2.025 Y Tceal6 n/a
8 TRCN0000182025 CAAGAGATGCACAGGATGCTT pLKO.1 829 CDS 100% 3.000 1.500 Y Tceal3 n/a
9 TRCN0000198961 GATATGACTAGGGCTCAGGAA pLKO.1 765 CDS 100% 2.640 1.320 Y Tceal3 n/a
10 TRCN0000184474 GACAAGAAAGCAAAGCCAGCA pLKO.1 444 CDS 100% 2.160 1.080 Y Tceal6 n/a
11 TRCN0000162766 CCAGAAGATGAAGTAGAGCCT pLKO.1 387 CDS 100% 0.660 0.330 Y TCEAL6 n/a
12 TRCN0000181387 CTGTGCTTTAACCTTCAGCCA pLKO.1 1020 3UTR 100% 0.660 0.330 Y Tceal3 n/a
13 TRCN0000135402 GTGAGGAGATGATGAGAGAAT pLKO.1 739 CDS 100% 4.950 2.970 N TCEAL3 n/a
14 TRCN0000135603 GAAGATGAAGTAGAGCCTGAT pLKO.1 390 CDS 100% 4.050 2.025 Y TCEAL3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006528586.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.