Transcript: Mouse XM_006528978.3

PREDICTED: Mus musculus pirin (Pir), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pir (69656)
Length:
1344
CDS:
276..1103

Additional Resources:

NCBI RefSeq record:
XM_006528978.3
NBCI Gene record:
Pir (69656)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006528978.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000274933 ACTCGCACACCAACCTTATAT pLKO_005 768 CDS 100% 15.000 21.000 N PIR n/a
2 TRCN0000193438 GAGGATTTGAAACAGTATCTT pLKO.1 451 CDS 100% 5.625 7.875 N Pir n/a
3 TRCN0000217355 GTGATGCAGAGTCCTTTAATC pLKO.1 1208 3UTR 100% 13.200 9.240 N Pir n/a
4 TRCN0000217462 GTGCTTCTGAAGCCACATTAA pLKO.1 1177 3UTR 100% 13.200 9.240 N Pir n/a
5 TRCN0000174663 GATGAATACCAATGAGGAAAT pLKO.1 1001 CDS 100% 10.800 7.560 N Pir n/a
6 TRCN0000217588 GTTGTCCAACATGGTCCATTT pLKO.1 978 CDS 100% 10.800 7.560 N Pir n/a
7 TRCN0000175976 GAAATTTCTCAGGCCATTCTT pLKO.1 1017 CDS 100% 5.625 3.938 N Pir n/a
8 TRCN0000173806 CTGGACTTCAAGTTGGACCAA pLKO.1 789 CDS 100% 2.640 1.848 N Pir n/a
9 TRCN0000193437 GAAGTCAAAGATTGGAAACTA pLKO.1 1082 CDS 100% 5.625 3.375 N Pir n/a
10 TRCN0000019257 GCCATTAAGAGAACCAGTTAT pLKO.1 962 CDS 100% 13.200 9.240 N PIR n/a
11 TRCN0000274934 GCCATTAAGAGAACCAGTTAT pLKO_005 962 CDS 100% 13.200 9.240 N PIR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006528978.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.