Transcript: Mouse XM_006529595.3

PREDICTED: Mus musculus contactin associated protein-like 5B (Cntnap5b), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cntnap5b (241175)
Length:
8155
CDS:
2..2257

Additional Resources:

NCBI RefSeq record:
XM_006529595.3
NBCI Gene record:
Cntnap5b (241175)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006529595.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094768 GACTGGAGTGACTACTGTTTA pLKO.1 1957 CDS 100% 13.200 18.480 N Cntnap5b n/a
2 TRCN0000434667 GTCTGACAGAGAATGATATTG pLKO_005 2705 3UTR 100% 13.200 10.560 N Cntnap5b n/a
3 TRCN0000094765 CCCTATGTCATGAACTTAAAT pLKO.1 326 CDS 100% 15.000 10.500 N Cntnap5b n/a
4 TRCN0000417457 ACAATTGTCCCTGGTCAATAT pLKO_005 2637 3UTR 100% 13.200 9.240 N Cntnap5b n/a
5 TRCN0000094766 CCAAACAGTGAGGTCACTCAT pLKO.1 1732 CDS 100% 4.950 3.465 N Cntnap5b n/a
6 TRCN0000094767 CCTTCCGAAGAGTATGAGGAT pLKO.1 1015 CDS 100% 2.640 1.848 N Cntnap5b n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6785 3UTR 100% 4.950 2.475 Y KAAG1 n/a
8 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 3734 3UTR 100% 4.950 2.475 Y Gad2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006529595.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.