Transcript: Mouse XM_006529838.3

PREDICTED: Mus musculus ubiquitin-conjugating enzyme E2F (putative) (Ube2f), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ube2f (67921)
Length:
2120
CDS:
398..955

Additional Resources:

NCBI RefSeq record:
XM_006529838.3
NBCI Gene record:
Ube2f (67921)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006529838.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098574 GAACATTCAATTGATGGCACT pLKO.1 761 CDS 100% 2.160 1.296 N Ube2f n/a
2 TRCN0000287773 GAACATTCAATTGATGGCACT pLKO_005 761 CDS 100% 2.160 1.296 N Ube2f n/a
3 TRCN0000098573 GCAGAACTTGAAGCTAATTTA pLKO.1 521 CDS 100% 15.000 7.500 Y Ube2f n/a
4 TRCN0000287847 GCAGAACTTGAAGCTAATTTA pLKO_005 521 CDS 100% 15.000 7.500 Y Ube2f n/a
5 TRCN0000098570 GCAATAAGAAACCCGCTATAA pLKO.1 1347 3UTR 100% 13.200 6.600 Y Ube2f n/a
6 TRCN0000287772 GCAATAAGAAACCCGCTATAA pLKO_005 1347 3UTR 100% 13.200 6.600 Y Ube2f n/a
7 TRCN0000295289 TCGGGACAAAGTGGATGAATA pLKO_005 913 CDS 100% 13.200 6.600 Y Ube2f n/a
8 TRCN0000416997 TGATCCAAACAAGCTTCATTG pLKO_005 568 CDS 100% 10.800 5.400 Y UBE2F n/a
9 TRCN0000098572 CCAAGGTGAAATGCTTGACTA pLKO.1 684 CDS 100% 4.950 2.475 Y Ube2f n/a
10 TRCN0000098571 GAGGGTTTCTGTGAGAGACAA pLKO.1 481 CDS 100% 4.950 2.475 Y Ube2f n/a
11 TRCN0000287774 GAGGGTTTCTGTGAGAGACAA pLKO_005 481 CDS 100% 4.950 2.475 Y Ube2f n/a
12 TRCN0000034112 CAGAACATCATTTGCGGGACA pLKO.1 882 CDS 100% 2.160 1.080 Y UBE2F n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006529838.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.