Transcript: Mouse XM_006530105.3

PREDICTED: Mus musculus zinc finger homeodomain 4 (Zfhx4), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfhx4 (80892)
Length:
15096
CDS:
1559..12382

Additional Resources:

NCBI RefSeq record:
XM_006530105.3
NBCI Gene record:
Zfhx4 (80892)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006530105.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000350638 ACGCCTGAGCAACTCGAAATA pLKO_005 9377 CDS 100% 13.200 18.480 N Zfhx4 n/a
2 TRCN0000274818 ATTGATATGCTGGCAATATAG pLKO_005 12522 3UTR 100% 13.200 10.560 N ZFHX4 n/a
3 TRCN0000321566 ATTGATATGCTGGCAATATAG pLKO_005 12522 3UTR 100% 13.200 10.560 N Zfhx4 n/a
4 TRCN0000321544 AGTTACACGTGTGGCTATAAA pLKO_005 3623 CDS 100% 15.000 10.500 N Zfhx4 n/a
5 TRCN0000350576 CATTCTCTTGGTCCATTATAA pLKO_005 6211 CDS 100% 15.000 10.500 N Zfhx4 n/a
6 TRCN0000321545 CCTGATGGATCAGCGTATATA pLKO_005 1958 CDS 100% 15.000 10.500 N Zfhx4 n/a
7 TRCN0000075529 CCCACTTAGATGCCAAAGAAT pLKO.1 6537 CDS 100% 5.625 3.938 N Zfhx4 n/a
8 TRCN0000015182 GCAACGAATGTGCCACTTCTT pLKO.1 1803 CDS 100% 4.950 3.465 N ZFHX4 n/a
9 TRCN0000075528 GCTGGCAATATAGGATGGTAT pLKO.1 12530 3UTR 100% 4.950 3.465 N Zfhx4 n/a
10 TRCN0000075532 GCTGGGTTTCAGCATTGAGAA pLKO.1 1741 CDS 100% 4.950 3.465 N Zfhx4 n/a
11 TRCN0000015179 GCTGTCTAGTTTAGTAGTGAA pLKO.1 2785 CDS 100% 4.950 3.465 N ZFHX4 n/a
12 TRCN0000015178 CCAGGATCTTTGACTTGATTA pLKO.1 8514 CDS 100% 13.200 9.240 N ZFHX4 n/a
13 TRCN0000143538 GATGAGGATGAAGAGGATGAA pLKO.1 2966 CDS 100% 4.950 2.475 Y ARMH4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006530105.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.