Transcript: Mouse XM_006530373.2

PREDICTED: Mus musculus huntingtin interacting protein 1 related (Hip1r), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hip1r (29816)
Length:
2816
CDS:
93..1781

Additional Resources:

NCBI RefSeq record:
XM_006530373.2
NBCI Gene record:
Hip1r (29816)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006530373.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000311312 GCGTGAAACTGGAGGTGAATG pLKO_005 1015 CDS 100% 10.800 8.640 N Hip1r n/a
2 TRCN0000090193 GCCTACCTTGATGAGTAGATT pLKO.1 2400 3UTR 100% 5.625 4.500 N Hip1r n/a
3 TRCN0000090196 CCCAGCTCAACTTGTGAACTA pLKO.1 1757 CDS 100% 4.950 3.960 N Hip1r n/a
4 TRCN0000331987 CCCAGCTCAACTTGTGAACTA pLKO_005 1757 CDS 100% 4.950 3.960 N Hip1r n/a
5 TRCN0000305357 ATCTGGATGTGAATCTATTTA pLKO_005 1910 3UTR 100% 15.000 10.500 N Hip1r n/a
6 TRCN0000305358 GTGCTTCACATGGGCAAATAC pLKO_005 1254 CDS 100% 13.200 9.240 N Hip1r n/a
7 TRCN0000381579 GGACAGAGACACCATGGATTT pLKO_005 1457 CDS 100% 10.800 7.560 N HIP1R n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006530373.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.