Transcript: Mouse XM_006531029.3

PREDICTED: Mus musculus nucleotide-binding oligomerization domain containing 2 (Nod2), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nod2 (257632)
Length:
2927
CDS:
105..2909

Additional Resources:

NCBI RefSeq record:
XM_006531029.3
NBCI Gene record:
Nod2 (257632)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006531029.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000362622 ATCTTTGCCTGGAGGATATAT pLKO_005 757 CDS 100% 15.000 10.500 N Nod2 n/a
2 TRCN0000362625 AGCTCTGTATTTGCGAGATAA pLKO_005 2477 CDS 100% 13.200 9.240 N Nod2 n/a
3 TRCN0000362559 GGGCACCTGAAGTTGACATTT pLKO_005 2316 CDS 100% 13.200 9.240 N Nod2 n/a
4 TRCN0000066814 GCCAACAGTCATACCTTTGAA pLKO.1 357 CDS 100% 5.625 3.938 N Nod2 n/a
5 TRCN0000066815 CCTTGCACACAAGCAGAACTT pLKO.1 2624 CDS 100% 4.950 3.465 N Nod2 n/a
6 TRCN0000066817 CTGGAGAAGAACAAGTCACTA pLKO.1 2877 CDS 100% 4.950 3.465 N Nod2 n/a
7 TRCN0000066813 GCTCAGGTTGACTCTGATGAT pLKO.1 1740 CDS 100% 4.950 3.465 N Nod2 n/a
8 TRCN0000066816 GCACATTACCTTCCAGTGCTT pLKO.1 1829 CDS 100% 2.640 1.848 N Nod2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006531029.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.