Transcript: Mouse XM_006531087.3

PREDICTED: Mus musculus NACHT and WD repeat domain containing 1 (Nwd1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nwd1 (319555)
Length:
9948
CDS:
784..5475

Additional Resources:

NCBI RefSeq record:
XM_006531087.3
NBCI Gene record:
Nwd1 (319555)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006531087.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000257630 ACAGGTGGTACACGTTCTAAT pLKO_005 3483 CDS 100% 13.200 10.560 N Nwd1 n/a
2 TRCN0000217309 GTGCTATCACCGATCAGTTAT pLKO.1 1266 CDS 100% 13.200 10.560 N Nwd1 n/a
3 TRCN0000257616 GTGCTATCACCGATCAGTTAT pLKO_005 1266 CDS 100% 13.200 10.560 N Nwd1 n/a
4 TRCN0000247062 TACGACTGTGCATGCTCTAAA pLKO_005 4903 CDS 100% 13.200 9.240 N Nwd1 n/a
5 TRCN0000257635 CAGGTAATCCAAGTTCGATAT pLKO_005 2767 CDS 100% 10.800 7.560 N Nwd1 n/a
6 TRCN0000178833 CCAGGTAATCCAAGTTCGATA pLKO.1 2766 CDS 100% 4.950 3.465 N Nwd1 n/a
7 TRCN0000179695 GCAAGGATCAACATGTGGAAT pLKO.1 3718 CDS 100% 4.950 3.465 N Nwd1 n/a
8 TRCN0000179877 CAGCTTTGTCTACTTCCCTAA pLKO.1 4455 CDS 100% 4.050 2.835 N Nwd1 n/a
9 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 7813 3UTR 100% 4.950 2.475 Y Gad2 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 8003 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006531087.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.