Transcript: Mouse XM_006534480.3

PREDICTED: Mus musculus tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 (Tanc2), transcript variant X8, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tanc2 (77097)
Length:
12346
CDS:
1011..6758

Additional Resources:

NCBI RefSeq record:
XM_006534480.3
NBCI Gene record:
Tanc2 (77097)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006534480.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238083 AGTACCAAATGAACGTATAAT pLKO_005 11183 3UTR 100% 15.000 21.000 N Tanc2 n/a
2 TRCN0000238080 ATTTGCTGGAGGACGATTATT pLKO_005 6523 CDS 100% 15.000 12.000 N Tanc2 n/a
3 TRCN0000239363 ATTTGCTGGAGGACGATTATT pLKO_005 6523 CDS 100% 15.000 12.000 N TANC2 n/a
4 TRCN0000238081 TAGCCAATCAGCGTCATATTA pLKO_005 5942 CDS 100% 15.000 12.000 N Tanc2 n/a
5 TRCN0000238079 TTCTGGGAGGTGCCAATATTA pLKO_005 3349 CDS 100% 15.000 10.500 N Tanc2 n/a
6 TRCN0000238082 ACAACCAAGTGACCAATATAG pLKO_005 1055 CDS 100% 13.200 9.240 N Tanc2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006534480.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.